DBMI Publications

Concha-Benavente F, Srivastava RM, Trivedi S, Lei Y, Chandran U, Seethala RR, Freeman GJ, Ferris RL. Identification of the Cell-Intrinsic and -Extrinsic Pathways Downstream of EGFR and IFNy That Induce PD-L1 Expression in Head and Neck Cancer. Cancer Research. 2016 Mar 1;76(5):1031-43. PMID:26676749.
Pineda AL, Ogoe HA, Balasubramanian JB, Rangel Escareño C, Visweswaran S, Herman JG, Gopalakrishnan V. On Predicting lung cancer subtypes using 'omic' data from tumor and tumor-adjacent histologically-normal tissue.  BMC Cancer. 2016 Mar 4;16:184. doi: 10.1186/s12885-016-2223-3. PMID:  26944944  PMCID:  PMC4778315  DOI: 10.1186/s12885-016-2223-3  
Shyam Visweswaran, Jessica Tenenbaum,  Ramkiran Gouripeddi at  Informatics Implementation - 2016 Joint Summits, March 2016
Bringing clinical pharmacogenomics information to pharmacists: A qualitative study of information needs and resource requirements. Romagnoli KM, Boyce RD, Empey PE, Adams S, Hochheiser H. International Journal of Medical Informatics , Volume 86 , 54 - 61 PMID: 26725696 PMCID: PMC4720137 [Available on 2017-02-01]
N. Batmanghelich, A. Dalca, G. Quon, M. Sabuncu, P. Golland, Probabilistic Modeling of Imaging, Genetics and the Diagnosis. IEEE Transactions on Medical Imaging (TMI), pp 1765-1779, 2016.  PMID: 26886973 DOI: 10.1109/TMI.2016.2527784
Arielle M. Fisher, Mary I. Herbert, Gerald P. Douglas.  Understanding the dispensary workflow at the Birmingham Free Clinic: a proposed framework for an informatics intervention. BMC Health Service Research. 2015 Feb 19;16(1):69. DOI: 10.1186/s12913-016-1308-7  PMID: 26892780 [PubMed-in process]
Fisher A, Herbert MI, Douglas GP. Understanding the dispensary workflow at the Birmingham Free Clinic: A proposed framework for an informatics intervention. BMC Health Serv Res. 2016 Feb 19; 16:69. PMCID: PMC4759722. doi: 10.1186/s12913-016-1308-7
E.A. Voss, R.D. Boyce, P.B. Ryan, J. van der Lei, P.R. Rijnbeek, M.J.Schuemie, Accuracy of an Automated Knowledge Base for Identifying Drug Adverse Reactions, Journal of Biomedical Informatics, Available online 16 December 2016, ISSN 1532-0464, http://dx.doi.org/10.1016/j.jbi.2016.12.005.
Torbati ME, Mitreva M, Gopalakrishnan V. Application of Taxonomic Modeling to Microbiota Data Mining for Detection of Helminth Infection in Global Populations.  2016 Dec;1(3). pii: 19. doi: 10.3390/data1030019. Epub 2016 Dec 13.    PMID: 28239609  PMCID: PMC5325162  DOI: 10.3390/data1030019  
Naeini Pakdaman M, Cooper GF. Binary classifier calibration using an ensemble of near isotonic regression models. In: Proceedings of the IEEE International Conference on Data Mining (2016) Dec;2016:360-369.  doi: 10.1109/ICDM.2016.0047  PMID: 28316511 PMCID: PMC5351887

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