DBMI Publications

Hill SM, et al. Inferring causal molecular networks: Empirical assessment through a community-based effort. Nature Methods (2016) Apr; 13(4):310-318. doi: 10.1038/nmeth.3773. PMID: 26901648 PMCID: PMC4854847
Kim Y, Ge Y, Tao C, Zhu J, Chapman AB, Torres VE, Yu ASL, Mrug M, Bennett WM, Flessner MF, Landsittel DP, Bae KT, and for the Consortium for Radiologic Imaging Studies of Polycystic Kidney Disease (CRISP). Automated segmentation of kidneys from MR images in subjects with autosomal dominant polycystic kidney disease. Clinical Journal of the American Society of Nephrology. 2016;11(4):576-584. PMID:  26797708 PMCID: PMC4822671 DOI: 10.2215/CJN.08300815
Stolovitzky, G., Hill, S., Heiser, L, Lu, X, Jiang, X, et al.  (2016) Inferring causal molecular networks: empirical assessment through a community-based effort.  Nature Methods. 13, 310–318 PMID: 26901648 PMCID: PMC4854847  
N. Batmanghelich, A. Saeedi, K. Narasimhan, S. Gershman, Nonparametric Spherical Topic Modeling with Word Embeddings. Proceedings of the 54th Annual Meeting of the Association for Computational Linguistics (ACL), pp 537-542, 2016. arXiv:1604.00126
Hochheiser, H., Ning, Y., Hernandez, A., Horn, J. R., Jacobson, R., & Boyce, R. D. (2016). Using Nonexperts for Annotating Pharmacokinetic Drug-Drug Interaction Mentions in Product Labeling: A Feasibility Study. JMIR Research Protocols, 5(2), e40. http://doi.org/10.2196/resprot.5028 PMID: 27066806 PMCID: PMC4844909
McCray AT, Glaser J, Koppel R, Langlotz CP, Silverstein J. Health IT vendors and the academic community: The 2014 ACMI debate. J Biomed Inform. 2016 Apr;60:365-75. doi: 10.1016/j.jbi.2016.03.003. Epub 2016 Mar 8. PMID: 26968349
Shyam Visweswaran, Jessica Tenenbaum,  Ramkiran Gouripeddi at  Informatics Implementation - 2016 Joint Summits, March 2016
Pineda AL, Ogoe HA, Balasubramanian JB, Rangel Escareño C, Visweswaran S, Herman JG, Gopalakrishnan V. On Predicting lung cancer subtypes using 'omic' data from tumor and tumor-adjacent histologically-normal tissue.  BMC Cancer. 2016 Mar 4;16:184. doi: 10.1186/s12885-016-2223-3. PMID:  26944944  PMCID:  PMC4778315  DOI: 10.1186/s12885-016-2223-3  
Concha-Benavente F, Srivastava RM, Trivedi S, Lei Y, Chandran U, Seethala RR, Freeman GJ, Ferris RL. Identification of the Cell-Intrinsic and -Extrinsic Pathways Downstream of EGFR and IFNy That Induce PD-L1 Expression in Head and Neck Cancer. Cancer Research. 2016 Mar 1;76(5):1031-43. PMID:26676749.
Arielle M. Fisher, Mary I. Herbert, Gerald P. Douglas.  Understanding the dispensary workflow at the Birmingham Free Clinic: a proposed framework for an informatics intervention. BMC Health Service Research. 2015 Feb 19;16(1):69. DOI: 10.1186/s12913-016-1308-7  PMID: 26892780 [PubMed-in process]

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