DBMI Publications

Chandran, U. R., Luthra, S., Santana-Santos, L., Mao, P., Kim, S.-H., Minata, M., Li J, Benos PV, DeWang M, Hu B, Cheng SY, Nakano I, Sobol RW. (2015). Gene expression profiling distinguishes proneural glioma stem cells from mesenchymal glioma stem cells. Genomics Data, 5, 333–336. http://doi.org/10.1016/j.gdata.2015.07.007 PMID: 26251826 PMCID: PMC4523279
Arturo López Pineda, Ye Ye, Shyam Visweswaran, Gregory F. Cooper, Michael M. Wagner, Fuchiang Rich Tsui. Comparison of Machine Learning Classifiers for Influenza Detection from Emergency Department Free-text Reports. Journal of Biomedical Informatics. Available online 16 September 2015, ISSN 1532-0464. PMID: 26385375 http://dx.doi.org/10.1016/j.jbi.2015.08.019.(http://www.sciencedirect.com/science/article/pii/S1532046415001872)
Lu, S., Lu, KN, Cheng, S., Ma, X., Nystrom, N., Lu, X. (2015) Identifying driver genomic alterations in cancers by searching minimum-weight, mutually exclusive sets.  PLoS Computational Biology 11(8):e1004257 PMID: 26317392  PMCID: PMC4552843
Liao S, Hartmaier RJ, McGuire KP, Puhalla SL, Luthra S, Chandran UR, Ma T, Bhargava R, Modugno F, Davidson NE, Benz S, Lee AV, Tseng GC, Oesterreich S. (2015). The molecular landscape of premenopausal breast cancer. Breast Cancer Research : BCR, 17(1), 104. http://doi.org/10.1186/s13058-015-0618-8 PMID: 26251034 PMCID: PMC4531812
Gopalakrishnan V, Menon PG, Madan S., cMRI-BED: A novel informatics framework for cardiac MRI biomarker extraction and discovery applied to pediatric cardiomyopathy classification. Biomed Eng Online. 2015;14 Suppl 2:S7. doi: 10.1186/1475-925X-14-S2-S7. Epub 2015 Aug 13. PMID: 26329721 PMCID: PMC4547147 DOI: 10.1186/1475-925X-14-S2-S7  
Harries AD, Kumar AM, Karpati A, Jahn A, Douglas GP, Gadabu OJ, Chimbwandira F, Zachariah R. Monitoring treatment outcomes in patients with chronic disease: lessons from tuberculosis and HIV/AIDS care and treatment programmes. Tropical Medicine & International Health. 2015 Jul; 20 (7):961-64. doi: 10.1111/tmi.12506 PMID: 25779103
Ogoe, HA, Visweswaran, S, Lu, X, Gopalakrishnan, V.  (2015) Knowledge transfer via classification rules using functional mapping for integrative modeling of gene expression data.  BMC Bioinformatics 16:226 (designated as a Highly Accessed paper) PMID: 26202217 PMCID: PMC4512094
Cooper GF, Bahar I, Becich MJ, Benos PV, Berg J, Espino JU, Jacobson RC, Kienholz M, Lee AV, Lu X, Scheines R, Center for Causal Discovery team. The Center for causal discovery of biomedical knowledge from Big Data. Journal of the American Medical Informatics Association 2015 Jul 2. pii: ocv059. doi: 10.1093/jamia/ocv059. [Epub ahead of print]  PMID: 26138794
Visweswaran S, Ferreira A, Cooper GF. Personalized modeling for prediction with decision-path models. PLoS One. 2015 Jun 22;10(6):e0131022 PMID: 26098570 PMCID: PMC4476684
Geskin A, Legowski E, Chakka A, Chandran UR, Barmada MM, LaFramboise WA, Berg J, Jacobson RS. (2015). Needs Assessment for Research Use of High-Throughput Sequencing at a Large Academic Medical Center. PLoS ONE, 10(6), e0131166. http://doi.org/10.1371/journal.pone.0131166 PMID: 26115441 PMCID: PMC4483235

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