DBMI Publications

Day RS.  What Tumor Dynamics Modeling Can Teach us About Exploiting the Stem-Cell View for Better Cancer Treatment. Cancer Informatics 2015 Feb 24;14(Suppl 2):25-36. PMID: 25780337 PMCID: PMC4345852
Kevin McDade, Uma Chandran, Roger Day.  Improving Cancer Gene Expression Data Quality through a TCGA Data-Driven Evaluation of Identifier Filtering.  Cancer Informatics 2015 Dec 16;14:149-161.  DOI: 10.4137/CIN.S33076
Jiang X, Jao J, Neapolitan RE. Learning predictive interactions using information gain and Bayesian network scoring. PLoS ONE 2015; 10(12): e0143247. doi:10.1371/journal.pone.0143247. PMCID: PMC4666609
Handen A, Ganapthiraju MK. LENS: web-based lens for enrichment and network studies of human proteins. BMC Medical Genomics. 2015;8(Suppl 4):S2. doi:10.1186/1755-8794-8-S4-S2.  
Roth A, Subramanian S, Ganapathiraju MK. Towards extracting supporting information about predicted protein-protein interactions. IEEE/ACM Trans Comput Biol Bioinform. 2015 Dec 7. [Epub ahead of print] PubMed PMID: 26672046.  
McDade KK, Chandran U, Day RS. Improving Cancer Gene Expression Data Quality through a TCGA Data-Driven Evaluation of Identifier Filtering. Cancer Informatics, 2015. PMID: 26715829 PMCID: PMC4686346
Landis-Lewis, Z., Douglas, G. P., Hochheiser, H., Kam, M., Gadabu, O., Bwanali, M., & Jacobson, R. S. (2015). Computer-Supported Feedback Message Tailoring for Healthcare Providers in Malawi: Proof-of-Concept. AMIA Annual Symposium Proceedings, 2015, 814–823.
Eric Strobl, Shyam Visweswaran. Markov boundary discovery with ridge regularized linear models. Journal of Causal Inference. ISSN (Online) 2193-3685, ISSN (Print) 2193-3677, DOI: 10.1515/jci-2015-0011, November 2015
Romagnoli, KM., Boyce, RD., Empey, PE., Adams, S., Hochheiser, H., Bringing clinical pharmacogenomics information to pharmacists: a qualitative study of information needs and resource requirements. International Journal of Medical Informatics. 2015 Nov.  DOI: http://dx.doi.org/10.1016/j.ijmedinf.2015.11.015
A. Gupta, H. Wang and M. Ganapathiraju, "Learning structure in gene expression data using deep architectures, with an application to gene clustering," Bioinformatics and Biomedicine (BIBM), 2015 IEEE International Conference on, Washington, DC, 2015, pp. 1328-1335. doi: 10.1109/BIBM.2015.7359871

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