DBMI Publications

Tseytlin E, Mitchell K, Legowski E, Corrigan J, Chavan G, Jacobson RS. NOBLE – Flexible concept recognition for large-scale biomedical natural language processing. BMC Bioinformatics 2016 17:32. PMID: 26763894 [PubMed - in process]  PMCID:  PMC4712516
Ganapathiraju MK, Thahir M, Handen A, Sarkar SN, Sweet RA, Nimgaonkar VL, Loscher CE, Bauer EM, Chaparala S: Schizophrenia interactome with 504 novel protein–protein interactions. Npj Schizophrenia 2016, 2:16012. Link to Publication
Huser, Vojtech; DeFalco, Frank J.; Schuemie, Martijn; Ryan, Patrick B.; Shang, Ning; Velez, Mark; Park, Rae Woong; Boyce, Richard D.; Duke, Jon; Khare, Ritu; Utidjian, Levon; and Bailey, Charles (2016) "Multisite Evaluation of a Data Quality Tool for Patient-Level Clinical Datasets," eGEMs (Generating Evidence & Methods to improve patient outcomes): Vol. 4: Iss. 1, Article 24. DOI: http://dx.doi.org/10.13063/2327-9214.1239
Mathew L, Lott J, Isse K, Lesniak A, Landsittel D, Demetris A, Sun Y, Mercer D, Webber S, Zeevi A, Fisher R, Feingold B, and Turnquist H. Increased Expression of the IL-33 Receptor, ST2, Correlates with Pediatric Heart and Small Bowel Transplant Rejection. American Journal of Transplantation. 2016. 16(3):938-950.
Arturo López Pineda, Ye Ye, Shyam Visweswaran, Gregory F. Cooper, Michael M. Wagner, Fuchiang Rich Tsui. Comparison of Machine Learning Classifiers for Influenza Detection from Emergency Department Free-text Reports. Journal of Biomedical Informatics. Available online 16 September 2015, ISSN 1532-0464. PMID: 26385375 http://dx.doi.org/10.1016/j.jbi.2015.08.019.(http://www.sciencedirect.com/science/article/pii/S1532046415001872)
Chandran, U. R., Luthra, S., Santana-Santos, L., Mao, P., Kim, S.-H., Minata, M., Li J, Benos PV, DeWang M, Hu B, Cheng SY, Nakano I, Sobol RW. (2015). Gene expression profiling distinguishes proneural glioma stem cells from mesenchymal glioma stem cells. Genomics Data, 5, 333–336. http://doi.org/10.1016/j.gdata.2015.07.007 PMID: 26251826 PMCID: PMC4523279
Archer, K. J., Dobbin, K., Biswas, S., Day, R. S., Wheeler, D. C., & Wu, H. (2015). Computer Simulation, Bioinformatics, and Statistical Analysis of Cancer Data and Processes. Cancer Informatics, 14(Suppl 2), 247–251. PMID: 26380548 PMCID: PMC4559198 DOI: 10.4137/CIN.S32525
R. Ceschin, B. F. Kurland, S. R. Abberbock, B. M. Ellingson, H. Okada, R. I. Jakacki, I. F. Pollack, and A. Panigrahy, “Parametric Response Mapping of Apparent Diffusion Coefficient as an Imaging Biomarker to Distinguish Pseudoprogression from True Tumor Progression in Peptide-Based Vaccine Therapy for Pediatric Diffuse Intrinsic Pontine Glioma.,” AJNR. Am. J. Neuroradiol., Sep. 2015. PMID: 26338910 PMCID: PMC4644687 DOI: 10.3174/ajnr.A4428
R. Ceschin, V. K. Lee, V. Schmithorst, and A. Panigrahy, “Regional vulnerability of longitudinal cortical association connectivity: Associated with structural network topology alterations in preterm children with cerebral palsy.,” NeuroImage. Clin., vol. 9, pp. 322–37, Jan. 2015. PMID: 26509119 PMCID PMC4588423 DOI: 10.1016/j.nicl.2015.08.021
Jacobson RS, Becich MJ, Bollag RJ, Chavan G, Dhir R, Corrigan J, Feldman M, Ganguly A, Gaudioso C, Legowski E, Maihle N, Mitchell K, Murphy M, Sakthivel M, Tseytlin E, Weaver J.  A Federated Network for Translational Cancer Research Using Clinical Data and Biospecimens.  Cancer Research 2015;75(24):5194-201. PMID:26670560 PMCID:PMC4683415 [Available on 2016-12-15]
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