Publications for Madhavi Ganapathiraju, PhD








"N-gram analysis of 970 microbial organisms reveals presence of biological language models", Hatice U. Osmanbeyoglu and Madhavi Ganapathiraju, BMC Bioinformatics (in press).





"Collaborative Discovery and Biological Language Modeling Interface",
Madhavi Ganapathiraju, Vijayalaxmi Manoharan, Raj Reddy and Judith Klein-Seetharaman,
Lecture Notes in Artificial Intelligence, LNCS/LNAI 3864, 2006.

"Retinitis pigmentosa associated with rhodopsin mutations: Correlation between phenotypic variability and molecular effects", Iannaccone A, D. Man, N. Waseem, BJ. Jennings, Madhavi Ganapathiraju, K. Gallaher, E. Reese, SS. Bhattacharya, J. Klein-Seetharaman, Vision Research, vol 46, issue 27, pp 4556-67, 2006.

"Comparison of stability predictions and simulated unfolding of rhodopsin structures", Oznur Tastan, Esther Yu, Madhavi Ganapathiraju, Anes Aref, AJ Rader and Judith Klein-Seetharaman, Photobiology and photochemistry, vol 63, issue 2, pp 351-363, 2006.

"Digital Library of India: a testbed for Indian language research",
N. Balakrishnan, Raj Reddy, Madhavi Ganapathiraju, Vamshi Ambati,
IEEE Technical Committee on Digital Libraries (TCDL) Bulletin, vol 3, issue 1, 2006.

"TelMore: Morphological Generator for Telugu Nouns and Verbs", Madhavi Ganapathiraju and Lori Levin, Proc. Second International Conference on Universal Digital Library, Vol Alexandria, Egypt, Nov 17-19, 2006.

"Multilingual Book Reader: Transliteration, Word-to-Word Translation and Full-text Translation",
Prashanth Balajapally, Phanindra Pydimarri, Madhavi Ganapathiraju, N. Balakrishnan, Raj Reddy,
VALA 2006: 13th Biennial Conference and Exhibition Conference of Victorian Association for Library Automation, Melbourne, Australia, February 8-10, 2006.


"BLMT Web Server: Interactive Language Technologies for Analogous Biological Data",
Vijayalaxmi Manoharan, Madhavi Ganapathiraju and Judith Klein-Seetharaman,
Workshop on Ambient Intelligence and (Everyday) Life, Donostia, San-Sebastian, Spain, 2005.

"Om: One tool for many (Indian) languages", Ganapathiraju Madhavi, Balakrishnan Mini, Balakrishnan N., Reddy Raj, Journal of Zhejiang University SCIENCE, Vol 6A, No. 11, pp 1348-1353, Oct 2005.


"Computational Biology and Language", Madhavi Ganapathiraju, N. Balakrishnan, Raj Reddy and Judith Klein-Seetharaman, Lecture Notes in Artificial Intelligence, LNCS/LNAI 3345, 2004.

"BLMT: Statistical sequence analysis using n-grams", Madhavi Ganapathiraju, Vijayalaxmi Manoharan and Judith Klein-Seetharaman, Applied Bioinformatics, vol. 3, issue 2, November 2004.

"Characterization of Protein Secondary Structure using Latent Semantic Analysis",
Madhavi Ganapathiraju, Judith Klein-Seetharaman, N. Balakrishnan and Raj Reddy,
IEEE Signal Processing Magazine, vol. 21, issue 3, May 2004.

"Yule value tables from Protein Datasets of different categories: emphasis on membrane proteins"[Invited Talk], Madhavi Ganapathiraju, Deborah Weisser, Raj Reddy and Judith Klein-Seetharaman, Proc. SCI2004, Florida, USA, 2004.



"Comparative n-gram analysis of whole-genome sequences" Madhavi Ganapathiraju, Deborah Weisser, Judith Klein-Seetharaman, Roni Rosenfeld, Jaime Carbonell and Raj Reddy, HLT'02: Human Language Technologies Conference, San Diego, March, 2002.

"Rare and frequent amino acid n-grams in whole-genome protein sequences", Madhavi Ganapathiraju, Judith Klein-Seetharaman, Roni Rosenfeld, Jaime Carbonell and Raj Reddy,  RECOMB'02: The Sixth Annual International Conference on Research in Computational Molecular Biology, Washington DC, USA, April, 2002.